amplicon

• Overview
• Features
• Installation
• Get started
• Long-form documentations

Overview

Amplicon is a comprehensive R package for analyzing primer dimers and off-target amplification in amplicon sequencing data.

Features

The package provides tools to:

  • Detect primer dimers
  • Identify off-target amplifications
  • Filter reads not containing primer
  • Visualize read length distributions
  • Generate statistical summaries

Installation

You can install the development version from GitHub with:

## Install < remotes > package (if not already installed) ----
if (!requireNamespace("remotes", quietly = TRUE)) {
  install.packages("remotes")
}

## Install < amplicon > from GitHub ----
remotes::install_github("Max10-afk/amplicon")

Then you can attach the package amplicon:

Get started

For an overview of the main features of amplicon, please read the Get started vignette. It also provides a small tutorial with some toy data!

Long-form documentations

amplicon provides 1 vignette to learn more about the package:

  • the Get started vignette describes the core features of the package